This is a list of publications that include undergraduate authors which have resulted from faculty research partnerships. Bold text indicates undergraduate author and the name in italics indicates their faculty mentor.


Duncan, L., Miller, B., Shaw, C., Graebner, R., Moretti, M.L., Walter, C., Selker, J. and Udell, C., 2022. Weed Warden: A Low-Cost Weed Detection Device Implemented with Spectral Triad Sensor for Agricultural Applications. HardwareX, e00303.

Edmonds, N.L., R.A. Stockey and G.W. Rothwell. 2022. Tolmania aquatica gen et sp. nov. from southern Alberta, Canada. International Journal of Plant Sciences. In press.


Chu, M., Patton, A., Roering, J., Siebert, C., Selker, J., Walter, C. and Udell, C., 2021. SitkaNet: A low-cost, distributed sensor network for landslide monitoring and study. HardwareX, 9, e00191.

Clonch, C., Huynh, M., Goto, B., Levin, A., Selker, J., and Udell, C. 2021. High Precision Zero-friction Magnetic Dendrometer. HardwareX, e00248.

Flora, T., Smallman, M., Kutzler, M.A. (2021) Resuscitation compression for newborn sheep. Veterinary Clinics: Food Animal Practice 36(3)

Levintal, E., Kang, K.L., Larson, L., Winkelman, E., Nackley, L., Weisbrod, N., Selker, J.S. and Udell, C.J., 2021. eGreenhouse: Robotically positioned, low-cost, open-source CO2 analyzer and sensor device for greenhouse applications. HardwareX, 9, e00193.

McAllister, A., Kutzler, M. A. (2021) Imperforate vagina with secondary septic hydrometrocolpos. Journal of the American Veterinary Medical Association 258(2)

Nguyen, B., Goto, B., Selker, J.S., Udell, C. 2021. Hypnos board: A low-cost all-in-one solution for environment sensor power management, data storage, and task scheduling. HardwareX, 10: e00213.

Smith, K.T., Ramsperger, C.A., Hunter, K.E., Zuehlsdorff, T.J., Stylianou, K.C. (2021) Colorimetric detection of acidic pesticides in water. Chem. Comm. 


Agirseven, D.T. Rivella, Jr., J.E.S. Haggerty, P.O. BerryK. DiffendafferA. Patterson, J. Kreb, J.S. Mangum, B.P. Gorman, J.D. Perkins, B.R. Chen, L.T. Schelhas, J. Tate. Crystallization of TiO2 polymorphs from RF-sputtered, amorphous thin-film precursors. AIP Advances10(2), 025109.

Anderson, A., Dodge, J., Sadarangani, A., Juozapaitis, Z., Newman, E., Irvine, J., Chattopadhyay, S., Olson, M., Fern, A., and Burnett, M. (2020). Mental Model of Mere Mortals with Explanations of Reinforcement Learning. ACM Transactions on Interactive Intelligent Systems (TIIS), 10(2), 1-37.

Beyer, J., Hosseinzadeh, P., Gottfried-Lee, I., Van Fossen, E. M., Zhu, P., Bednar, R. M., Karplus, A., Mehl, R. A., and Cooley, R. B. (2020). Overcoming near-cognate suppression in a Release Factor 1-deficient host with an improved nitro-tyrosine tRNA synthetaseJournal of Molecular Biology, 432(16), pp. 4690-4704.

Buser, T.J., Boyd, O.F., Cortés, Á., Donatelli, C.M., Kolmann, M.A., Luparell, J.L., Pfeiffenberger, J.A., Sidlauskas, B.L. and Summers, A.P. (2020). The natural historian’s guide to the CT galaxy: step-by-step instructions for preparing and analyzing computed tomographic (CT) data using cross-platform, open access softwareIntegrative Organismal Biology.

Casey, J.L.Cservenka, A. (2020). Effects of frequent marijuana use on risky decision-making in young adult college students. Addictive Behaviors Reports, 11:110253.

Crandon, L.E., Boenish, K., Harper, B.J., & Harper, S.L. (2020). Adaptive methodology to determine the hydrophobicity of nanomaterials in situ. PLOS ONE, 15(6):e0233844. 

Flora, T., Smallman, M. A., Kutzler, M. A. (2020). Developing a modified Apgar scoring system for newborn lambs. Theriogenology 157:321-326.

Goertzen, L., Mehr, N., Lopez, M., Udell, C., and Selker, J.S. Low-Cost and Precise Inline Pressure Sensor Housing and DAQ for Use in Laboratory Experiments. HardwareX. e00112. 

Gurung, R., Stoa, R., Livingston, N., & Mather, H. (2020). Can success deflect racism? Clothing and perceptions of African American men. The Journal of Social Psychology, 1-10.

Gurung, R., Mai, T., Nelson, M., & Pruitt, S. (2020). Predicting Learning: Comparing Study Techniques, Perseverance, and Metacognitive Skill. Teaching of Psychology. 

Hurtado, D., Greenspan, S., Dumet, L., Heinonen, G. [Accepted] Safety Champions: rationale and 12-month effectiveness on leading indicators of a worker-led pilot program. The Joint Commission Journal on Quality and Patient Safety. 

Katancik, M., Mirzababaei, S., Ghayoor, M., Pasebani, S. (2020). Selective laser melting and tempering of H13 tool steel for rapid tooling applications. (2020). Journal of Alloys and Compounds, 849.

Kiefel, C. & Kutzler, M. AAssessment of luteinizing hormone receptor expression in structural support tissues of canine hip and femorotibial joints. American Journal of Veterinary Research. 2020;81(7):565-571.

Kleditz, L., Habeeb, H. M. H., Kutzler M. A. (2020) Follicle stimulating hormone receptors are expressed in ewe’s reproductive and nonreproductive tissues. Clinical Theriogenology 12(4):507-510.

Larasatie, P., Barnett, T., & Hansen, E. (2020). Leading with the heart and/or the head? Experiences of women student leaders in top world forestry universities. Scandinavian Journal of Forest Research.

Larasatie, P., Barnett, T., & Hansen, E. (2020). The “Catch-22” of Representation of Women in the Forest Sector: The Perspective of Student Leaders in Top Global Forestry UniversitiesForests11(4), 419.

Li, Z., Niu, W., Yang, Z., Zaman, N., Samarakoon, W., Wang, M., Kara, A., Lucero, M., Vyas, M.V., Chao, H., Zhou, H., Sterbinsky, G.E., Feng, Z., Du, Y., & Yang, Y. (2020). Stabilizing atomic Pt with trapped interstitial F in alloyed PtCo nanosheets for high-performance zinc-air batteries, Energy & Environmental Science, 13, 884-895.

Logan, S.W., Hospodar, C.M., Bogart, K.R., Catena, M.A., Feldner, H.A., Fitzgerald, J., Schaffer, S., Sloane, B., Phelps, B., Phelps, J., & Smart, W.D. (in press). Real world use of modified ride-on cars. Journal of Motor Learning and Development.

Mai, T., Khanna, R., Dodge, J., Irvine, J., Lam, K., Lin, Z., Kiddle, N., Newman, E., Raja, S., Matthews, C., Perdriau, C., Burnett, M., & Fern, A. (2020). Keeping It "Organized and Logical": After-Action Review for AI (AAR/AI). ACM Conference on Intelligent User Interfaces (IUI).

Matosziuk, L. M., Gallo, A., Hatten, J., Bladon, K. D., Ruud, D., Bowman, M., ... & Weiglein, T. (2020). Short-term effects of recent fire on the production and translocation of pyrogenic carbon in Great Smoky Mountains National Park. Frontiers in Forest and Global Change, 3(6), 1-15.

Moses, A. S., Taratula, O. R., Lee, H., Luo, F., Grenz, T., Korzun, T., ... & Slayden, O. D. (2020). Nanoparticle‐Based Platform for Activatable Fluorescence Imaging and Photothermal Ablation of Endometriosis. Small17(5): 1538-1545

Nash, T., Chow, E.S., Law, A.D., Fu, S., Fuszara, S., Bilska, A., Bebas, P., Kretzschmar, D., & Giebultowicz, J.M. (2019). Daily blue light exposure shortens lifespan and causes brain neurodegeneration in Drosophila. Aging and Mechanisms of Disease5(1), 1-8.

Nguyen, T,. Harreschou, I., Lee, JH., Stylianou, K., Stephan, D. (2020). A recyclable metal-organic framework for ammonia vapour adsorption. Chemical Communications, 56(67).

Powers, M., Fogaca J., Gurung, R., & Jackman, C. (2020). Predicting Student-Athlete Mental Health: Coach–Athlete RelationshipPsi Chi Journal of Psychological Research 25(2), 172-180.

R. Sousa, C. Simon. (2020). Evaluating the Fitness of Combinations of Adsorbents for Quantitative Gas Sensor ArraysACS Sensors, 5(12), 4035-4047.

Ryan, E., Klopfenstein, J., Kutzler, M. A. (2020). Intramammary antibiotics with complementary acupuncture decreases milk serum N‐acetyl‐beta‐D‐glucosaminidase concentrations in dairy cattle with subclinical mastitis. Reproduction in Domestic Animals

Saini, J.S., Palian, C., Lei, F., Dyall, A., AuYeung, N., McQuade, R., Gupta, S.K., Cann, D.P., & Xu, D. (2020). Rare-earth and precious-metal free Cu-based metallic glasses with superior glass-forming ability and processability. Applied Physics Letters, 116(1), 011901.

Scharfstein, A.R., Stockey, R.A. and G.W. Rothwell. 2020. Evolution and phylogeny of Altingiaceae: anatomically preserved infructescences from Late Cretaceous deposits of Vancouver Island, British Columbia, Canada. International Journal of Plant Sciences 181:452–463. DOI: 10.1086/707107.

Sturluson, A., Sousa, R., Zhang, Y., Huynh, M.T., Laird, C., York, A.H., Silsby, C., Chang, C.H., & Simon, C. (2020). Curating metal-organic frameworks to compose robust gas sensor arrays in dilute conditions. ACS Applied Materials & Interfaces12(5), 6546-6564.

Sunchu, B., Riordan, R. T., Yu, Z., Almog, I., Dimas-Munoz, J., Drake, A. C., & Perez, V. I. (2020). Aggresome-Like Formation Promotes Resistance to Proteotoxicity in Cells from Long-Lived Species. The Journals of Gerontology: Series A.

Toure, A.O., AuYeung, N., Sambe, F.M., Malace, J.S., and Lei, F. (2020). Cement Clinker Based on Industrial Waste Materials. Journal of Civil & Environmental Engineering, 10(3). In press. 


Adpressa, D.A., Connolly, L.R., Konkel, Z.M., Neuhaus, G.F., Chang, X.L., Pierce, B.R., Smith, K.M., Freitag, M., & Loesgen, S. (2019). A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modificationFungal Genet. Biol., 132:103256

Albarqi, H. A., Wong, L. H., Schumann, C., Sabei, F. Y., Korzun, T., Li, X., ... & Taratula, O. (2019). Biocompatible nanoclusters with high heating efficiency for systemically delivered magnetic hyperthermiaACS Nano13(6), 6383-6395.

Alcala, J. M. L., Haagsma, M., Udell, C. J., & Selker, J. S. (2019). HyperRail: Modular, 3D Printed, 1-100 meter, Programmable, and Low-cost Linear Motion Control System for Imaging and Sensor Suites. HardwareX, e00081.

Anderson, A., Dodge, J., Sadarangani, A., Juozapaitis, Z., Newman, E., Irvine, J., Chattopadhyay, S., Fern, A., & Burnett, M. (2019). Explaining Reinforcement Learning to Mere Mortals: An Empirical Study. International Joint Conference on Artificial Intelligence (IJCAI).

Basnet, K., Fatemipouya, T., Lorenz, A. S., Nguyen, M., Taratula, O., Henary, M., & Grant, K. B. (2019). Single photon DNA photocleavage at 830 nm by quinoline dicarbocyanine dyes. Chemical Communications55(84), 12667-1267.

Bhattacharya, N., Sato, W.J., Kelly, A., Ganguli-Indra, G., & Indra, A.K. (2019). Epidermal lipids: Key mediators of atopic dermatitis pathogenesis. Trends Mol. Med., pii: S1471-4914(19)30070-X.

Bridges, L. & Caleen, S. (2019, April). Wikipedia Student Scholar. Wikimedia Education News.

Crandon, L.E., Cataldi, V.N., Luker, S.R., Harper, B.J., & Harper, S.L. (2019). Sonication energy for the preparation of aqueous nanoparticle dispersions. International Journal of Engineering Research and Applications., 9: 40-49.

DeBell, T. C., Goertzen, L., Larson, L., Selbie, W., Selker, J. S., & Udell, C. (2019). OPEnS Hub: Real-time Data Logging, Connecting Field Sensors to Google Sheets. Frontiers in Earth Science.

Ettinger AM, Gust SK, & Kutzler MA. (2019) Luteinizing hormone receptor expression by nonneoplastic and neoplastic canine lymphocytes. Am J Vet Res., 80(6), 572-577.

Gaulke, C. A., Martins, M. L., Watral, V. G., Humphreys, I. R., Spagnoli, S. T., Kent, M. L., & Sharpton, T. J. (2019). A longitudinal assessment of host-microbe-parasite interactions resolves the zebrafish gut microbiome’s link to Pseudocapillaria tomentosa infection and pathology. Microbiome7(1), 1-16.

Goñi, M.A., Corvi, E.R., Welch, K.A., Buktenica, M., Lebon, K., Alleau, Y., & Juranek L.W. (2019). Particulate organic matter distributions in surface waters of the Pacific Arctic shelf during the late summer and fall season. Marine Chemistry, 211, 75-93.

Haverkamp, A., Butler, A., & Pelzl, N. S., Bothwell, M. K., Montfort, D., & Driskill, Q. (2019). Exploring Transgender and Gender Nonconforming Engineering Undergraduate Experiences through AutoethnographyPaper presented at 2019 CoNECD - The Collaborative Network for Engineering and Computing Diversity, Crystal City, Virginia.

Hiebel K, Gentle L, Menino A, & Kutzler M. (2019). Acupuncture prevents the postpartum reduction in matrix metalloproteinase type-2 immunoexpression, tissue concentration and enzyme activity in bovine caruncles. Reproduction in Domestic Animals54(7), 1010-1017.

Hinkle C.M. & Koretsky, M.DTowards Professional Practice: Student Learning through Participation in Engineering Clubs. (2019). European Journal of Engineering Education, 44(6), 906-922.

Johnson, R. M., & Bothwell, M. K., Montfort, D., & Furman, K. (2019). Measuring the Conceptualization of Oppression and Privilege, Paper presented at 2019 CoNECD - The Collaborative Network for Engineering and Computing Diversity, Crystal City, Virginia.

Ku, B., Heinonen, G., MacDonald, M. & Hatfield, B. (2019)  An inquiry into how parents of children with autism spectrum disorder interact with their children in a physical activity-based play setting. Research in Developmental Disabilities94, 103494.

Lahanas, S. Cservenka, A. (2019). Frequent marijuana use and cognitive flexibility in young adult college studentsJournal of Drug and Alcohol Research, 8: 236075

Lawrence, K.E., Lam, K.C., Morgun, A., Shulzhenko, N., & Löhr, C.V. (2019). Effect of temperature and time on the thanatomicrobiome of the cecum, ileum, kidney, and lung of domestic rabbits. J Vet Diagn Invest. 31(2):155-163.

Logan, S.W., Catena, M.A., Sabet, A., Hospodar, C.M., Yohn, H., Govindan, A., & Galloway, J.C. (2019). Standing tall: Feasibility of a modified ride-on car that encourages standing. Pediatric Physical Therapy, 31(1), E6-E13.

Lopez Alcala, J. M., Udell, C. J., & Selker, J. (2019). A User-Printable Three-Rate Rain Gauge Calibration System. Frontiers in Earth Science.

Lorzing, G., Gosselin, E., Trump, B., York, A.H., Sturluson, A., Rowland, C., Yap, G.P.A, Brown, C.M., Simon, C., & Bloch, E.D. (2019). Understanding gas storage in cuboctahedral porous coordination cages. Journal of the American Chemical Society141(30), 12128-12138.

Mestas, P., Clayton, P., & Niemeyer, K. (2019). pyMARS: automatically reducing chemical kinetic models in PythonJournal of Open Source Software, 4(41):1543.

Negretti, C., Sherwood, D. M., Hazzard, T. M., & Kutzler, M. A. (2019). Comparison of Serum and Hair Testosterone Concentrations in Free-Roaming Stallions. J Vet Sci Ani Husb, 7(2), 203.

Pinkham, K., Park, D.J., Hashemiaghdam, A., Kirov, A.B., Adam, I., Rosiak, K., da Hora, C.C., Teng, J., Cheah, P.S., Carvalho, L., Kelly, A., Ganguli-Indra, G., Indra, A.K., & Badr, C.E. (2019). Stearoyl CoA desaturase is essential for regulation of endoplasmic reticulum homeostasis and tumor growth in glioblastoma cancer stem cells. Stem Cell Reports, 9;12(4): 712-727.

Reynolds, N.C., J.Y. Zhong, C.A. Clendinen, S.D. Moffat, & K.R. Magnusson (2019). Age-related differences in brain activations during spatial memory formation in a well-learned virtual Morris water maze (vMWM) task. NeuroImage202, 116069.

Robinson, M.M., Sather, B.K., Burney, E.R., Ehrlicher ,S.E., Stierwalt, H.D., Franco, M.C., & Newsom, S.A. (2019). Robust intrinsic differences in mitochondrial respiration and H2O2 emission between L6 and C2C12 cells. American Journal of Physiology-Cell Physiology317(2), C339-C347.

Shankar Raman, A., Harper, D.S, Haapala, K.R., Linke, B.S., Bernstein, W.Z., & Morris, K.C. (2019). Challenges in Representing Manufacturing Processes for Systematic Sustainability Assessments, Workshop on June 21, 2018, Proceedings of the ASME 2019 14th International Manufacturing Science and Engineering Conference (MSEC).

Sturluson, A., Huynh, M. T., Kaija, A., Laird, C., Yoon, S., Hou, F., Feng, Z., Wilmer, C., Colon, Y., Chung, Y., Siderius, D., Simon, C. (2019). The Role of Molecular Modeling and Simulation in the Discovery and Deployment of Metal-Organic Frameworks for Gas Storage and Separation. Molecular simulation45(14-15), 1082-1121.

The GenderMag Teach Project, Burnett, M., Steine-Hanson, Z., & Oleson, A. EduCHI Symposium at CHI’19, May 2019, Glasgow, Scotland, UK. 5 pages.

Wolf T, Meyer H, & Kutzler M. (2019) Litter size response to oestrous induction with deslorelin (Ovuplant®) in dogs. Reproduction in Domestic Animals47, 387-388.

Zamzow, D.R., V. Elias, V. Acosta, E. Escobedo, and K.R. Magnusson (2019) Higher levels of protein palmitoylation in the frontal cortex across aging were associated with reference memory and executive function declines. eNeuro6(1).


Alabdullatif, A.M., Lorona, S. P., & Koretsky, M.D. Students’ Responses to Professionally Contextualized Activities in a Studio Class. (2018). Proceedings of the 2018 American Society for Engineering Education Annual Conference & Exposition Salt Lake City, UT.

Bagherisereshki, E. (co-first author), Tran, J(co-first author), Lei, F., & AuYeung, N. (2018). Investigation into SrO/SrCO3 for high temperature thermochemical energy storage. Solar Energy, 160, pp. 85-93.

Bednar, R. M., Golbek, T. W., Kean, K. M., Brown, W. J., Jana, S., Baio, J. E., Karplus, A., & Mehl, R. A. (2019). Immobilization of proteins with controlled load and orientationACS applied materials & interfaces11(40), 36391-36398.

Bormann, J., Heinze, C., Blum, C., Mentges, M., Brockmann, A., Alder, A., Landt, S.K., Josephson, B., Indenbirken, D., Spohn, M., Plitzko, B., Loesgen, S., Freitag, & M., Schäfer, W. (2018). Expression of a Structural Protein of the Mycovirus FgV-ch9 Negatively Affects the Transcript Level of a Novel Symptom Alleviation Factor and Causes Virus Infection-Like Symptoms in Fusarium graminearum. J Virol., 92(17): e00326-18.

Chattopadhyay, S., Nelson, N., Nam, T., Calvert, M., & Sarma, A. (2018). Context in programming: an investigation of how programmers create context. In Proceedings of the 11th International Workshop on Cooperative and Human Aspects of Software Engineering (pp. 33-36).

Connolly, L.R., Erlendson, A.A., Fargo, C.M., Jackson, K.K., Pelker, M.M.G., Mazzola, J.W., Geisler, M.S., Freitag, M. (2018). Application of the Cre/lox System to Construct Auxotrophic Markers for Quantitative Genetic Analyses in Fusarium graminearum. Methods Mol. Biol., 1848: 235-263

Cservenka, A.Lahanas, S.Dotson-Bossert, J. (2018). Marijuana use and hypothalamic-pituitary-adrenal axis functioning in humansFrontiers in Psychiatry, 9: 432.

Gaulke, C. A., Arnold, H. K., Humphreys, I. R., Kembel, S. W., O’Dwyer, J. P., & Sharpton, T. J. (2018). Ecophylogenetics clarifies the evolutionary association between mammals and their gut microbiotaMBio9(5).

Godbole, A., Miller, B., Bothwell, M. K., Montfort, D., & Davis, S.C. (2018). Engineering Students' Perceptions of Belonging through the Lens of Social Identity, Paper presented at 2018 CoNECD - The Collaborative Network for Engineering and Computing Diversity Conference, Crystal City, Virginia.

Hardt, B.M., Ardia, D.R., Bashaw, M.J., & Rivers, J.W. (2018). Experimental brood enlargement differentially influences the magnitude of the corticosterone stress response in closely related, co‐occurring songbirdsFunctional Ecology32(8), 2008-2018.

Hurtado, D., Heinonen, G., Dumet L., Greenspan, S. (2018). Early-career nurses with fewer patient handling supportive peers are likely to quit. International Nursing Review, 65(4), 596-600.

Jian, Z., Wang, W., Wang, M., Wang, Y., AuYeung, N., Liu, M., and Feng, Z. (2018). Al2O3 coated LiCoO2 as cathode for high-capacity and long-cycling Li-ion batteries. Chinese Chemical Letters, 29, 1768-1772.

K. Yee, L. Jansen, C. Lajoie, M. Penner, L. Morse, C. Kelly. (2018). Furfural and 5-Hydroxymethyl-Furfural Degradation using Recombinant Manganese PeroxidaseEnzyme and Microbial Technology. 108:59-65.

Lam K.C., Vyshenska, D., Hu, J., Rodrigues, R.R., Nilsen, A., Zielke, R.A., Brown N.S., Aarnes, E.K., Sikora, A.E., Shulzhenko, N., Lyng, H., Morgun, A. (2018). Transkingdom network reveals bacterial players associated with cervical cancer gene expression program. PeerJ, 6:e5590.

LaFortune, J., & Macuga, K.L. (2018). Learning movements from a virtual instructor: Effects of spatial orientation, immersion, and expertise. Journal of Experimental Psychology: Applied, 24, 521-533. 

Li, X., Schumann, C., Albarqi, H.A., Lee, C.J., Alani, A.W., Bracha, S., ... & Taratula, O. (2018). A tumor-activatable theranostic nanomedicine platform for NIR fluorescence-guided surgery and combinatorial phototherapyTheranostics8(3), 767-784.

Negretti, C., Edmonds, J., & Kutzler, M.A. (2018). Effects of Long-Acting Injectable Progesterone Given Two Days after Luteolysis on Estrus Suppression in Mares. J Vet Sci Ani Husb., 6(4), 402.

Nelson, K.J., Perkins, A., Van Swearingen, A.E.D., Hartman, S., Brereton, A., Parsonage, D., Salsbury, F.R., Karplus, P.A. & Poole, L.B. (2018). Experimentally Dissecting the Origins of Peroxiredoxin Catalysis. Antiox Redox Signal, 28, 521-536.

Oleson, A., Mendez, C., Steine-Hanson, Z., Hilderbrand, C., Perdriau, C., Burnett, M., & Ko, A. J. (2018). Pedagogical content knowledge for teaching inclusive design. In Proceedings of the 2018 ACM Conference on International Computing Education Research (pp. 69-77).

Olson, R. Shakespeare, William. 2018. _Romeo and Juliet_. Open Oregon State. (URSA Engage student Jac Longstreth is listed along with all of the student editors.)

Schumann, C., Nguyen, D. X., Norgard, M., Bortnyak, Y., Korzun, T., Chan, S., Wong, L., ..., Michaelis, K., & Taratula, O. (2018). Increasing lean muscle mass in mice via nanoparticle-mediated hepatic delivery of follistatin mRNATheranostics8(19), 5276-5288.

Schumann, C., Chan, S., Millar, J. A., Bortnyak, Y., Carey, K., Fedchyk, A., Wong, L., Korzun, T., Moses, A., Lorenz, A., Shea, D., ..., Taratula, O., & Shea, D. (2018). Intraperitoneal nanotherapy for metastatic ovarian cancer based on siRNA-mediated suppression of DJ-1 protein combined with a low dose of cisplatinNanomedicine: Nanotechnology, Biology and Medicine14(4), 1395-1405

Sirumalla, S.K., Mayer, M.A.Niemeyer, K.E., West, R.H. (2018). Assessing impacts of discrepancies in model parameters on autoignition model performance: a case study using butanolCombustion and Flame, 190:284–292.

Sturluson, A., Huynh, M.T., York, A.H., & Simon, C.M. (2018). Eigencages: Learning a latent space of porous cage moleculesACS Central Science4(12), 1663-1676.

VerWey, B.J., M.J. Kaylor, T.S. Garcia, D.R. Warren. (2018). Impacts of a severe drought on summer growth and movement of Cutthroat trout in a western Oregon headwater stream. Northwestern Naturalist, 99(3), 209-221.

X. Xiang, M. Gordon, T. Radniecki, C. Kelly. (2018). Anaerobic Digestion of algae for nutrient recovery. Environmental Engineering Science. Vol. 35, No 4.

Zanocco, C., Brown, M., Bachelet, D., Gough, M., Mutch, T., & Sheehan, T. (2018). Great Basin land managers provide detailed feedback about usefulness of two climate information web applications. Climate Risk Management20, 78-94.


Bohrer E.R., Löhr C.V., & Kutzler M.A. (2017). Prolactin and growth hormone immunoactivity in canine mammary adenomas and adenocarcinomas. Reprod Domest Anim., 52, 293-297.

Bovbjerg, M. L., Cheyney, M., Brown, J., Cox, K. J., & Leeman, L. (2017). Perspectives on risk: assessment of risk profiles and outcomes among women planning community birth in the United StatesBirth44(3), 209-221.

Brown, M., & Bachelet, D. (2017). BLM sagebrush managers give feedback on eight climate web applicationsWeather, Climate, and Society9(1), 39-52.

Burns, M.D., Chatfield, M., Birindelli, J.L. & Sidlauskas, B.L. (2017). Systematic assessment of the Leporinus desmotes species complex, with a description of two new speciesNeotropical Ichthyology15(2).

C. KellyA. Nguyen. (2017). Skills and Knowledge Important in Bioprocessing Design – a Survey of Practicing Engineers. Proceedings of the 2017 American Society for Engineering Education Annual Conference and Exposition.13 pages.

Colcer, L., Smith, C., & Montfort, D. (2017). Problems of Our Own Devising: Individuals' Challenges in Enacting Systemic Changes to Increase the Inclusivity of Engineering Departments, Paper presented at 2017 ASEE Annual Conference & Exposition, Columbus, Ohio.

Drake, G., Freiberg, L., & AuYeung, N. (2017). Reactive phase change material for thermal energy storage.  Energy Technology, 6(2), pp. 351–356

Duong, T., Li, X., Yang, B., Schumann C., Albarqi, H.A., & Taratula, O. (2017). Phototheranostic Nanoplatform Based on a Single Cyanine Dye for Image-Guided Combinatorial Phototherapy. Nanomedicine, 13, 955-963.

Logan, S. W., Feldner, H. A., Bogart, K. R.Goodwin, B., Ross, S. M., Catena, M. A., Whitesell, A. A., Sefton, Z. J.Smart, W. D., & Galloway, J. C. (2017). Toy-based technologies for children with disabilities simultaneously supporting self-directed mobility, participation and function: A tech reportFrontiers in Robotics and Artificial Intelligence4, Article #7.

Logan, S. W., Feldner, H. A., Lobo, M. A., Winden, H. N.MacDonald, M., & Galloway, J. C. (2017). Power-up: Exploration and play in a novel modified ride-on car for standingPediatric Physical Therapy, 29(1), 30-37.

Logan, S. W., Ross, S. M., Chee, K., Stodden, D. F., & Robinson, L. E. (2017). Fundamental motor skills: A systematic review of terminologyJournal of Sports Sciences, 36(7), 781-796.

Marquez-Loza, A.M., Elias, V., C.P. Wong, E. Ho, M. Bermudez and K.R. Magnusson. (2017). Effects of Ibuprofen on Cognition and NMDA Receptor Subunit Expression Across Aging. Neuroscience, 344: 276-292.

Matthews B.E., Holder A.M., Schelhas, L.T., Siol S., May, J.M., Forkner, M.R., Vigil-Fowler, D., Toney, M.F., Perkins, J.D, Gorman, B.P., Zakutayev, A., Lany, S., & Tate, J. (2017). Using heterostructural alloying to tune the structure and properties of the thermoelectric Sn1-xCaxSe J. Mater. Chem. A., 5, 16873-16882.

Nelson, D.V., Klink, H., Carbaugh-Rutland, A., Mathis, C.L., Morzillo, A., Garcia, T.S. (2017). Calling at the highway: the Spatio-Temporal constraint of road noise on Pacific chorus frog communication. Ecology and Evolution, 7: 429-440.

Raman, R., Raper, M.A., Hahn, E., & Schilke, K.F. (2017). Enhanced capture of bacteria and endotoxin by antimicrobial WLBU2 peptide tethered on polyethylene oxide spacersBiointerphases12(5), 05G603.

Rodrigues, R.R., Greer, R.L., Dong, X., Dsouza, K.N., Gurung, M., Wu, J.Y., Morgun, A., & Shulzhenko, N. (2017). Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice. Front Microbiol. 2017 Nov 22;8:2306.

Ross, S.M., Catena, M., Twardzik, E., Hospodar, C., Cook, E., Ayyagari, A., Inskeep, K., Sloane, B., MacDonald, M., & Logan, S.W. (2017). Feasibility of a modified ride-on car intervention on play behaviors during an inclusive playgroupPhysical and Occupational Therapy in Pediatrics, 38(5), 493-509. 

Sateri, S., Seidavi, A., Bouyeh, M., Neumann, P., Kutzler, M. A., Laudadio, V., Loperfido, F., Tufarelli, V. (2017). Effect of olive meal and supplemental enzymes on performance traits, blood biochemistry, humoral immunity response and cecal microbiota of broilers. South African Journal of Animal Science 47(6), 804-812.

Wilson, A.K., Watral, V.G., Kent, M.L., Sharpton, T.J., & Gaulke, C.A. (2017). Draft genome sequence of Pseudomonas sp. strain DrBHI1 (Phylum Proteobacteria)Genome announcements5(39).

Wu, F., Bortvedt, A., Harper, B.J., Crandon, L., Harper, S.L. (2017). Uptake and toxicity of CuO nanoparticles to Daphnia magna varies between indirect dietary and direct waterborne exposures. Aquatic Toxicology, 190: 78-86.

Zhong, J.Y., Magnusson, K.R., Swarts, M.E., Clendinen, C.A., Reynolds, N.C., & Moffat, S.D. (2017). The application of a rodent-based Morris water maze (MWM) protocol to an investigation of age-related differences in human spatial learning. Beh. Neurosci., 131(6):470-482.


Buczkowski, E.L., R.A. Stockey, B.A. Atkinson and G.W. Rothwell.  2016. Cunninghamia beardii sp. nov. (Cupressaceae: Cunninghamioideae), anatomically preserved pollen cones from the Eocene of Vancouver Island, British Columbia Canada. International Journal of Plant Sciences 177: 103-114.

C. Lajoie, J. Kitner, S. Potochnik, J. Townsend, C. Beatty, C. Kelly. (2016). Cloning, Expression and Characterization of Xylose Isomerase from the Marine Bacterium Fulvimarina pelagi in Escherichia coli. Biotechnology Progress. 32(5):1230-1237.

Conley, M.N., Wong, C.P., Duyck, K.M., Hord, N., Ho, E., & Sharpton, T.J. (2016). Aging and serum MCP-1 are associated with gut microbiome composition in a murine model. PeerJ4, e1854.

Hollingsworth, S.A., Lewis, M.C., & Karplus, P.A. (2016). Beyond basins: φ,ψ preferences of a residue depend heavily on the φ,ψ values of its neighbors. Protein Sci., 25, 1757-1762.

Koretsky, M. D., Brooks, B. J., White, R. M., & Bowen, A. S. (2016). Querying the questions: Student responses and reasoning in an active learning class. Journal of Engineering Education105(2), 219-244.

Larochelle, C.R., Pickens, F.A., Burns, M.D. and Sidlauskas, B.L. (2016). Long-term isopropanol storage does not alter fish morphometricsCopeia104(2), pp.411-420.

Ross, S. M., Bogart, K. R.Logan, S. W., Case, L., Fine, J., & Thompson, H. (2016). Physical activity participation of disabled children: A systematic review of conceptual and methodological approaches in health researchFrontiers in Public Health, 4, Article #187.

Schumann, C., Chan, S., Khalimonchuk, O., Khal, S., Moskal, V., Shah, V., ... & Taratula, O. (2016). Mechanistic nanotherapeutic approach based on siRNA-mediated DJ-1 protein suppression for platinum-resistant ovarian cancerMolecular pharmaceutics13(6), 2070-2083.

Yambartsev, A., Perlin, M.A., Kovchegov, Y., Shulzhenko, N., Mine, K.L., Dong, X., Morgun, A. (2016). Unexpected links reflect the noise in networks. Biol Direct., 13;11(1):52.

Zamzow, D., Elias V., Acosta V., Escobedo, E.,Magnusson, K.R. (2016) Higher levels of phosphorylated Y1472 on GluN2B subunits in the frontal cortex of aged mice are associated with good spatial reference memory, but not cognitive flexibility. AGE 38(3):50.


Bowen, A., Reid, D., & Koretsky, M. (2015). Development of interactive virtual laboratories to help students learn difficult concepts in thermodynamicsChemical Engineering Education49(4), 229-238.

Bulovsky, H & Harper, S.L. (2015). Developmental toxicity of stabilized zero valent iron nanoparticles on the embryonic zebrafish. The Catalyst 9: 7-9.

Driggers, C.M., Hartman, S.J. & Karplus, P.A. (2015). Structures of Arg- and Gln-type bacterial Cysteine Dioxygenase Homologs. Protein Sci, 24, 154-161.

Elkhal, C.K., Kean, K.M., Parsonage, D., Maenpuen, S., Chaiyen, P., Claiborne, A. & Karplus, P.A. (2015). Structure and proposed mechanism of α-glycerophosphate oxidase from Mycoplasma pneumonia. FEBS J, 282, 3030-3042.

Garcia, T.S., Rowe, J.C. & Doyle, J.B. (2015). A tad too high: Sensitivity to UV-B radiation may limit invasion potential of America bullfrogs in the Pacific Northwest invasion range. Aquatic Invasions 10: 237-247.

Holloway, M., Sanandaji, A., Yates, D., Krigger, A., Sowell, R., West, R., & Grimm, C. (2015). Guided structure-aligned segmentation of volumetric data. In International Symposium on Visual Computing (pp. 307-317). Springer, Cham.

Magnusson, K.R., Hauck, L., Jeffrey, B.M., Elias, V., Humphrey, A., Nath, R., Perrone, A., & Bermudez, L.E. (2015). Relationships between diet-related changes in the gut microbiome and cognitive flexibility. Neuroscience, 300: 128-140. PMID: 25982560.

Osborn, A.R., Almabruk, K.H., Holzwarth, G., Asamizu, S., LaDu, J., Kean, K.M., Karplus, P.A., Tanguay, R.L., Bakalinsky, A.T. & Mahmud, T. (2015). De novo synthesis of a sunscreen compound in vertebrates. eLIFE, 12; 4.

Schumann, C., Taratula, O., Khalimonchuk, O., Palmer, A. L., Cronk, L. M., Jones, C. V., Escalante, C., & Taratula, O. (2015). ROS-induced nanotherapeutic approach for ovarian cancer treatment based on the combinatorial effect of photodynamic therapy and DJ-1 gene suppression. Nanomedicine: Nanotechnology, Biology and Medicine11(8), 1961-1970.

Scully, C. M., Lee, R. L., Pielstick, L., Medlock, J., Patton, K. M., Collins, G. H., Kutzler, M. A. (2015). Comparison of chemical and surgical vasectomy on testicular activity in free-roaming horses (Equus caballus). Journal of Zoo and Wildlife Medicine 46(4), 815-24.

Smith, M.A., G.W. Rothwell and R.A. Stockey. 2015. Mesozoic diversity of Osmundaceae: Osmundacaulis whittlesii sp. nov. in the Early Cretaceous of western Canada. International Journal of Plant Sciences 176: 245–258.

Taratula, O., Patel, M., Schumann, C., Naleway, M. A., Pang, A. J., He, H., & Taratula, O. (2015). Phthalocyanine-loaded graphene nanoplatform for imaging-guided combinatorial phototherapy. International journal of nanomedicine10, 2347

Taratula, O., Schumann, C., Duong, T., Taylor, K. L., & Taratula, O. (2015). Dendrimer-encapsulated naphthalocyanine as a single agent-based theranostic nanoplatform for near-infrared fluorescence imaging and combinatorial anticancer phototherapyNanoscale7(9), 3888-3902.


Bonventre, J.A, Pryor, J.B., Harper, B.J. and Harper, S.L. (2014). The impact of aminated surface ligands and silica shells on the stability, uptake, and toxicity of engineered silver nanoparticles. Journal of Nanoparticle Research, 16:2761-2776.

Cooley, R.B., Feldman, J., Driggers, C.M., Bundy, T., Stokes, A., Karplus, P.A. & Mehl, R. (2014). Structural basis of improved second generation 3-nitro-tyrosine tRNA synthetases. Biochemistry, 53, 1916-1924.

Garlick, N. W., Newberry, G. N., & Rivers, J. W. (2014). An assessment of nestling diet composition in the violet-green swallow (Tachycineta thalassina). Northwest Science88(1), 49-54.

Goñi, M.A., Moore, E., Kurtz A., Portier, E., Alleau, Y., Merrell, D., (2014). Organic matter compositions and loadings in soils and sediments along the Fly River, Papua New GuineaGeochimica et Cosmochimica Acta, 140, 275-296.

Pryor, J.B., Harper, B.J., and Harper, S.L. (2014). Comparative toxicological assessment of PAMAM and thiophosphoryl dendrimers using embryonic zebrafishInternational Journal of Nanomedicine, 9: 1947-1956.

Smith, C., & Bowen, A., & Montfort, D., & Koretsky, M. (2014). Identification of Students’ Epistemological Frames in Engineering, Paper presented at 2014 ASEE Annual Conference & Exposition, Indianapolis, Indiana.


Geller, E, Anderson, A., and Harper, S.L. (2013). NanoScanner prototype development: A novel characterization instrument for nanomaterials. The Catalyst 8: 4-5.

Goñi, M.A., O’Connor, A., Kuzyk, Z.Z., Yunker, M., Gobeil, C. (2013). Distribution and sources of organic matter in surface sediments across the North American Arctic marginJournal of Geophysical Research – Oceans 118.

Mouriño-Pérez, R.R., Linacre-Rojas, L.P., Román-Gavilanes, A.I., Lew, T.K., Callejas-Negrete, O.A., Roberson, R.W., Freitag, M. (2013). MTB-3, a microtubule plus-end tracking protein (+TIP) of Neurospora crassa. PLoS One, 8(8): e70655.

Taratula, O., Schumann, C., Naleway, M. A., Pang, A. J., Chon, K. J., & Taratula, O. (2013). A multifunctional theranostic platform based on phthalocyanine-loaded dendrimer for image-guided drug delivery and photodynamic therapyMolecular pharmaceutics10(10), 3946-3958.

Wiedle, R.A., Warner, M., Tate J., Plassmeyer P.N., Page, C.J. (2013). Thermal conductivity of amorphous thin-film Al-P-O on silicon. Thin Solid Films, 548, 225-229.

Zamzow, D.R., V. Elias, M. Shumaker, C. Larson, and K.R. Magnusson (2013). An increase in the association of GluN2B containing NMDA receptors with membrane scaffolding proteins was related to memory declines during aging. J. Neuroscience, 33(30):12300 –12305.


Das, S.R., R. Jensen, R. Kelsay, M. Shumaker, R. Bochart, B. Brim, D. Zamzow, and K.R. Magnusson (2012). Reducing expression of GluN10XX subunit splice variants of the NMDA receptor interferes with spatial reference memory. Behav. Brain Res., 230 (2):317-324. 

Hollingsworth, S.A., Lewis, M.C., Berkholz, D.S., Wong, W-K., & Karplus, P.A. (2012). (φ,ψ)2 motifs: A purely conformation-based fine-grained enumeration of protein parts at the two-residue level. J Mol Biol, 416, 78-93.


Hollingsworth, S.A. & Karplus, P.A. (2010) A fresh look at the Ramachandran plot and the occurrence of standard structures in proteinsBiomol. Concepts, 1, 271-283

K. Schilke, K. Wilson, T. Cantrell, G. Corti, D. McIlroy, C. Kelly. (2010). A Novel Enzymatic Microreactor with Aspergillus Oryzae b-Galactosidase Immobilized on Silicon Dioxide NanospringsBiotechnology Progress. 26(6):1597-1605.

K. Seniow, E. Nefcy, C. Kelly, M. Koretsky. (2010).  Representations of Student Model Development in virtual Laboratories based on a Cognitive Apprenticeship Instructional DesignProceedings of the 2010 American Society for Engineering Education Annual Conference & Exposition. 16 pages.


Hollingsworth S., Berkholz D.S., & Karplus P.A. (2009). On the occurrence of linear groups in proteinsProtein Sci., 18, 1321-1325.


C. Kelly, O. Jones, C. BarnhartC. Lajoie. (2008). Effect of Furfural, Vanillin and Syringaldehyde on Candida guilliermondii Growth and Xylitol BiosynthesisApplied Biochemistry and Biotechnology. 148(1-3):97-108.

F. Jiang, P. Kongsaeree, R. Charron, C. Lajoie, H. Xu, G. Scott, C. Kelly. (2008). Production and Separation of Manganese Peroxidase from Heme Amended Yeast CulturesBiotechnology and Bioengineering 99(3):540-549.

Manning, V., Hamilton, S.M., Karplus. PA & Ciuffetti, L.M. (2008). The Arg-Gly-Asp-containing, solvent-exposed loop of Ptr ToxA is required for internalizationMol Plant Microbe Int., 21, 315-325. 

Tate, J., Newhouse, P.F., Kykyneshi, R., Hersh, P.A., Kinney, J., McIntyre, D.H., Keszler, D.A. (2008). Chalcogen-based transparent conductors. Thin Solid Films, 516, 5795-5799.


Parsonage, D., Youngblood, D.S., Sarma, G.N., Wood, Z.A., Karplus P.A. & Poole L.B. (2005). Analysis of the link between enzymatic activity and oligomeric state in AhpC, a bacterial peroxiredoxin. Biochemistry, 44, 10583-10592.

Office of Undergraduate Research